Hello One and All I self Answered... for all linux Users, and if the owner of the tilesets see this,
You forgot 1 file in the linux download pack, the file -MapBaseXML.txt
I was able to download the windows pack and copy the file from that and put it in the WorldEd folder to get the map to properly bmp to tmx.
And a Quick tip for linux version Users. GIMP is shit. find something called Pinta, it is basically the closest thing to Paint.net on Ubuntu that I could find.